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| doi | authors | year | title | type |
|---|---|---|---|---|
| 10.1017/s095026880100615x | T. E. BESSER; B. L. RICHARDS; D. H. RICE; D. D. HANCOCK | 2001 | Escherichia coli O157[ratio]H7 infection of calves: infectious dose and direct contact transmission | peer-reviewed |
| 10.1128/iai.65.5.1842-1848.1997 | E A Dean-Nystrom; B T Bosworth; W C Cray; H W Moon | 1997 | Pathogenicity of Escherichia coli O157:H7 in the intestines of neonatal calves. | peer-reviewed |
| 10.1128/AEM.70.3.1708-1716.2004 | M. C. Pearce; C. Jenkins; L. Vali; A. W. Smith; H. I. Knight; T. Cheasty; H. R. Smith; G. J. Gunn; M. E. J. Woolhouse; S. G. B. Amyes; G. Frankel | 2004 | Temporal Shedding Patterns and Virulence Factors of Escherichia coli Serogroups O26, O103, O111, O145, and O157 in a Cohort of Beef Calves and Their Dams | peer-reviewed |
| 10.1016/j.vaccine.2003.08.007 | Andrew A. Potter; Sandra Klashinsky; Yuling Li; Elizabeth Frey; Hugh Townsend; Dragan Rogan; Galen Erickson; Susanne Hinkley; Terry Klopfenstein; Rodney A. Moxley; David R. Smith; B.Brett Finlay | 2004 | Decreased shedding of Escherichia coli O157:H7 by cattle following vaccination with type III secreted proteins | peer-reviewed |
| 10.1016/s0167-5877(03)00023-0 | Helene Rugbjerg; Eva Møller Nielsen; Jens Strodl Andersen | 2003 | Risk factors associated with faecal shedding of verocytotoxin-producing Escherichia coli O157 in eight known-infected Danish dairy herds | peer-reviewed |
| 10.4315/0362-028x-64.12.1899 | DAVID SMITH; MARK BLACKFORD; SPRING YOUNTS; RODNEY MOXLEY; JEFF GRAY; LAURA HUNGERFORD; TODD MILTON; TERRY KLOPFENSTEIN | 2001 | Ecological Relationships between the Prevalence of Cattle Shedding Escherichia coli O157:H7 and Characteristics of the Cattle or Conditions of the Feedlot Pen | peer-reviewed |
| 10.4315/0362-028x-72.7.1547 | J. L. TALLEY; A. C. WAYADANDE; L. P. WASALA; A. C. GERRY; J. FLETCHER; U. DeSILVA; S. E. GILLILAND | 2009 | Association of Escherichia coli O157:H7 with Filth Flies (Muscidae and Calliphoridae) Captured in Leafy Greens Fields and Experimental Transmission of E. coli O157:H7 to Spinach Leaves by House Flies (Diptera: Muscidae) | peer-reviewed |
| 10.1089/fpd.2009.0410 | Callie Walker; Xiaorong Shi; Mike Sanderson; Jan Sargeant; T.G. Nagaraja | 2010 | Prevalence of Escherichia coli O157:H7 in Gut Contents of Beef Cattle at Slaughter | peer-reviewed |
| 10.4315/0362-028x-72.8.1624 | J. E. WELLS; S. D. SHACKELFORD; E. D. BERRY; N. KALCHAYANAND; M. N. GUERINI; V. H. VAREL; T. M. ARTHUR; J. M. BOSILEVAC; H. C. FREETLY; T. L. WHEELER; C. L. FERRELL; M. KOOHMARAIE | 2009 | Prevalence and Level of Escherichia coli O157:H7 in Feces and on Hides of Feedlot Steers Fed Diets with or without Wet Distillers Grains with Solubles | peer-reviewed |
| 10.1093/gigascience/giaa043 | Lim SK; Kim D; Moon DC; Cho Y; Rho M | 2020 | Antibiotic resistomes discovered in the gut microbiomes of Korean swine and cattle | peer-reviewed |
| 10.1016/j.foodcont.2019.03.022 | Serajus Salaheen; Seon Woo Kim; Jeffrey S. Karns; Ernest Hovingh; Bradd J. Haley; Jo Ann S. Van Kessel | 2019 | Metagenomic analysis of the fecal microbiomes from Escherichia coli O157:H7-shedding and non-shedding cows on a single dairy farm | peer-reviewed |
| 10.3389/fmicb.2018.01715 | Doster E; Rovira P; Noyes NR; Burgess BA; Yang X; Weinroth MD; Lakin SM; Dean CJ; Linke L; Magnuson R; Jones KI; Boucher C; Ruiz J; Belk KE; Morley PS | 2018 | Investigating Effects of Tulathromycin Metaphylaxis on the Fecal Resistome and Microbiome of Commercial Feedlot Cattle Early in the Feeding Period | peer-reviewed |
| 10.3389/fmicb.2020.609950 | Salaheen S; Kim SW; Hovingh E; Van Kessel JA; Haley BJ | 2021 | Metagenomic Analysis of the Microbial Communities and Resistomes of Veal Calf Feces | peer-reviewed |
| 10.1038/s41598-018-24280-8 | Zaheer R; Noyes N; Ortega Polo R; Cook SR; Marinier E; Van Domselaar G; Belk KE; Morley PS; McAllister TA | 2018 | Impact of sequencing depth on the characterization of the microbiome and resistome | peer-reviewed |
| 10.3389/fmicb.2020.601407 | Duarte AS; Röder T; Van Gompel L; Petersen TN; Hansen RB; Hansen IM; Bossers A; Aarestrup FM; Wagenaar JA; Hald T | 2021 | Metagenomics-Based Approach to Source-Attribution of Antimicrobial Resistance Determinants – Identification of Reservoir Resistome Signatures | peer-reviewed |
| 10.7554/eLife.13195 | Noyes NR; Yang X; Linke LM; Magnuson RJ; Dettenwanger A; Cook S; Geornaras I; Woerner DE; Gow SP; McAllister TA; Yang H; Ruiz J; Jones KL; Boucher CA; Morley PS; Belk KE | 2016 | Resistome diversity in cattle and the environment decreases during beef production | peer-reviewed |
| 10.3389/fmicb.2019.01980 | Rovira P; McAllister T; Lakin SM; Cook SR; Doster E; Noyes NR; Weinroth MD; Yang X; Parker JK; Boucher C; Booker CW; Woerner DR; Belk KE; Morley PS | 2019 | Characterization of the Microbial Resistome in Conventional and “Raised Without Antibiotics” Beef and Dairy Production Systems | peer-reviewed |
| 10.1089/fpd.2019.2768 | Bradd J. Haley; Seon-Woo Kim; Serajus Salaheen; Ernest Hovingh; Jo Ann S. Van Kessel | 2020 | Differences in the Microbial Community and Resistome Structures of Feces from Preweaned Calves and Lactating Dairy Cows in Commercial Dairy Herds | peer-reviewed |
| 10.1093/jas/skz306 | Weinroth MD; Martin JN; Doster E; Geornaras I; Parker JK; Carlson CR; Metcalf JL; Morley PS; Belk KE | 2019 | Investigation of tylosin in feed of feedlot cattle and effects on liver abscess prevalence, and fecal and soil microbiomes and resistomes | peer-reviewed |
| 10.3389/fmicb.2014.00622 | Klein-Jöbstl D; Schornsteiner E; Mann E; Wagner M; Drillich M; Schmitz-Esser S | 2014 | Pyrosequencing reveals diverse fecal microbiota in Simmental calves during early development | peer-reviewed |
| 10.1371/journal.pone.0196171 | Muñoz-Vargas L; Opiyo SO; Digianantonio R; Williams ML; Wijeratne A; Habing G | 2018 | Fecal microbiome of periparturient dairy cattle and associations with the onset of Salmonella shedding | peer-reviewed |
| 10.1371/journal.pone.0098115 | Xu Y; Dugat-Bony E; Zaheer R; Selinger L; Barbieri R; Munns K; McAllister TA; Selinger LB | 2014 | Escherichia coli O157:H7 Super-Shedder and Non-Shedder Feedlot Steers Harbour Distinct Fecal Bacterial Communities | peer-reviewed |
| 10.1371/journal.pone.0170050 | Zaheer R; Dugat-Bony E; Holman D; Cousteix E; Xu Y; Munns K; Selinger LJ; Barbieri R; Alexander T; McAllister TA; Selinger LB | 2017 | Changes in bacterial community composition of Escherichia coli O157:H7 super-shedder cattle occur in the lower intestine | peer-reviewed |
| 10.1139/cjm-2015-0814 | Marija Kaevska; Petra Videnska; Karel Sedlar; Iva Bartejsova; Alena Kralova; Iva Slana | 2016 | Faecal bacterial composition in dairy cows shedding Mycobacterium avium subsp. paratuberculosis in faeces in comparison with nonshedding cows | peer-reviewed |
| 10.7717/peerj.888 | Young W; Hine BC; Wallace OA; Callaghan M; Bibiloni R | 2015 | Transfer of intestinal bacterial components to mammary secretions in the cow | peer-reviewed |
| 10.1089/fpd.2016.2121 | Hee-Jin Dong; Woohyun Kim; Jae-Uk An; Junhyung Kim; Seongbeom Cho | 2016 | The Fecal Microbial Communities of Dairy Cattle Shedding Shiga Toxin–Producing Escherichia coli or Campylobacter jejuni | peer-reviewed |
| 10.1038/s41598-018-21440-8 | Yeoman CJ; Ishaq SL; Bichi E; Olivo SK; Lowe J; Aldridge BM | 2018 | Biogeographical Differences in the Influence of Maternal Microbial Sources on the Early Successional Development of the Bovine Neonatal Gastrointestinal tract | peer-reviewed |
| 10.1038/srep40864 | Dill-McFarland KA; Breaker JD; Suen G | 2017 | Microbial succession in the gastrointestinal tract of dairy cows from 2 weeks to first lactation | peer-reviewed |
| 10.1002/jsfa.8380 | Shengyin Jiao; Hui Cao; Yue Dai; Junhui Wu; Jia Lv; Renjia Du; Bei Han | 2017 | Effect of high-fat diet and growth stage on the diversity and composition of intestinal microbiota in healthy bovine livestock | peer-reviewed |
| 10.1128/AEM.01738-17 | Wang O; McAllister TA; Plastow G; Stanford K; Selinger B; Guan LL | 2017 | Interactions of the Hindgut Mucosa-Associated Microbiome with Its Host Regulate Shedding of Escherichia coli O157:H7 by Cattle | peer-reviewed |
| 10.1128/AEM.02675-17 | Dias J; Marcondes MI; Motta de Souza S; Cardoso da Mata e Silva B; Fontes Noronha M; Tassinari Resende R; Machado FS; Cuquetto Mantovani H; Dill-McFarland KA; Suen G | 2018 | Bacterial Community Dynamics across the Gastrointestinal Tracts of Dairy Calves during Preweaning Development | peer-reviewed |
| 10.1186/s40168-019-0696-4 | Holman DB; Yang W; Alexander TW | 2019 | Antibiotic treatment in feedlot cattle: a longitudinal study of the effect of oxytetracycline and tulathromycin on the fecal and nasopharyngeal microbiota | peer-reviewed |
| 10.1038/s41598-018-28733-y | Alipour MJ; Jalanka J; Pessa-Morikawa T; Kokkonen T; Satokari R; Hynönen U; Iivanainen A; Niku M | 2018 | The composition of the perinatal intestinal microbiota in cattle | peer-reviewed |
| 10.1186/s12866-020-01993-3 | Gong G; Zhou S; Luo R; Gesang Z; Suolang S | 2020 | Metagenomic insights into the diversity of carbohydrate-degrading enzymes in the yak fecal microbial community | peer-reviewed |
| 10.6084/m9.figshare.14176574 | Fei Xie | 2021 | An integrated gene catalog and over 10,000 metagenome-assembled genomes from the gastrointestinal microbiome of ruminants | peer-reviewed |
| 10.1038/s41467-022-28402-9 | Feng Tong; Teng Wang; Na L. Gao; Ziying Liu; Kuiqing Cui; Yiqian Duan; Sicheng Wu; Yuhong Luo; Zhipeng Li; Chengjian Yang; Yixue Xu; Bo Lin; Liguo Yang; Alfredo Pauciullo; Deshun Shi; Guohua Hua; Wei-Hua Chen; Qingyou Liu | 2022 | The microbiome of the buffalo digestive tract | peer-reviewed |
| 10.3389/fmicb.2021.768480 | Corrêa PS; Jimenez CR; Mendes LW; Rymer C; Ray P; Gerdes L; da Silva VO; De Nadai Fernandes EA; Abdalla AL; Louvandini H | 2021 | Taxonomy and Functional Diversity in the Fecal Microbiome of Beef Cattle Reared in Brazilian Traditional and Semi-Intensive Production Systems | peer-reviewed |
| 10.3390/antibiotics11020123 | Timo Homeier-Bachmann; Anne K. Schütz; Sylvia Dreyer; Julien Glanz; Katharina Schaufler; Franz J. Conraths | 2022 | Genomic Analysis of ESBL-Producing E. coli in Wildlife from North-Eastern Germany | peer-reviewed |
| 10.3390/antibiotics11010117 | Dong L; Meng L; Liu H; Wu H; Schroyen M; Zheng N; Wang J | 2022 | Effect of Cephalosporin Treatment on the Microbiota and Antibiotic Resistance Genes in Feces of Dairy Cows with Clinical Mastitis | peer-reviewed |
| 10.3390/ani12010003 | Tardón DC; Hoffmann C; Santos FC; Decaris N; Pinheiro FA; Queiroz LL; Hurley DJ; Gomes V | 2021 | Relationships among Indicators of Metabolism, Mammary Health and the Microbiomes of Periparturient Holstein Cows | peer-reviewed |
| 10.4014/jmb.2109.09038 | Hyeri Kim; Jin Ho Cho; Minho Song; Jae Hyoung Cho; Sheena Kim; Eun Sol Kim; Gi Beom Keum; Hyeun Bum Kim; Ju-Hoon Lee | 2021 | Evaluating the prevalence of foodborne pathogens in livestock using metagenomics approach | peer-reviewed |
| 10.1371/journal.pone.0258069 | Virginio Junior GF; Reis ME; da Silva AP; de Toledo AF; Cezar AM; Mendes LW; Greco L; Montenegro H; Coutinho LL; Bittar CM | 2021 | Does algae β-glucan affect the fecal bacteriome in dairy calves? | peer-reviewed |
| 10.1016/j.animal.2021.100281 | A.S. Dankwa; U. Humagain; S.L. Ishaq; C.J. Yeoman; S. Clark; D.C. Beitz; E.D. Testroet | 2021 | Bacterial communities in the rumen and feces of lactating Holstein dairy cows are not affected when fed reduced-fat dried distillers' grains with solubles | peer-reviewed |
| 10.3168/jds.2020-19998 | A. Kaltenegger; E. Humer; C. Pacífico; Q. Zebeli | 2021 | Feeding dairy cows bakery by-products enhanced nutrient digestibility, but affected fecal microbial composition and pH in a dose-dependent manner | peer-reviewed |
| 10.1038/s41467-020-20389-5 | Kim HS; Whon TW; Sung H; Jeong YS; Jung ES; Shin NR; Hyun DW; Kim PS; Lee JY; Lee CH; Bae JW | 2021 | Longitudinal evaluation of fecal microbiota transplantation for ameliorating calf diarrhea and improving growth performance | peer-reviewed |
| doi | authors | year | title | type |